收集细胞注释marker(持续更新)
"Myeloid": ["PTPRC", "CD68", "CD14", "CSF1R", "CD163", "LYZ"],
"T cells": ["CD3D", "CD3E", "CD3G", "CD2"],
"NK": ["NCAM1", "KLRF1", "KLRD1", "KLRG1", "GNLY", "NKG7", "FCGR3A"],
"Fibroblast": ["COL1A1", "COL1A2", "DCN", "LUM"],
"B cells": ["MS4A1","CD79A","CD19", "MZB1", "JCHAIN"],
"Plasma cells": ["CD38", "XBP1", "SDC1", "IGKC"],
"Endothelial": ["PECAM1", "VWF", "CDH5"],
"Epithelial": ["EPCAM", "YAP1", "CDH1", "MUC1", "ALDH1A1", "KRT8", "KRT18", "KRT19"],
"Mast cells": ["MS4A2", "KIT", "TPSAB1", "TPSB2"],
"Oligodendrocyte": ["MAG", "CLDN11", "APLP1", "TMEM144", "CNDP1", "EDIL3", "LARP6", "MOG", "AMER2", "TUBB4A"],
"Pericyte": ["COL1A2", "COL6A2", "PDGFRB", "COL3A1", "EDNRA", "LUM", "COL1A1", "PLAC9", "FRZB"],
'HLA_gene': ['HLA-A', 'HLA-B', 'HLA-C', 'HLA-E', 'HLA-F', 'HLA-G', 'HLA-DPA1', 'HLA-DPB1', 'HLA-DQA1', 'HLA-DQB1', 'HLA-DRA', 'HLA-DRB1', 'HLA-DRB5', 'HLA-DOA', 'HLA-DOB', 'HLA-DMA', 'HLA-DMB'],
'inflame_gene': ['IL1A', 'IL1B', 'IL6', 'CXCL1', 'CXCL2', 'CXCL3', 'CXCL5', 'CXCL8', 'CCL2', 'CCL3', 'CCL4', 'CCL20', 'PTGS2', 'VEGFA'],
'M2': ['CD274', 'PDCD1LG2', 'CD276', 'CD163', 'MRC1', 'ARG1', 'IL10', 'FOLR2', 'CD209'],
'M1': ['CD80', 'CD86', 'IL6', 'IL12A', 'IL12B', 'TNF', 'FCGR1A', 'FCGR3A', 'FCGR2A'],
'phagocytosis': ['MERTK', 'LRP1', 'CR1', 'TREM2', 'SIRPA', 'SIGLEC10', 'LILRB1']
'Gastric cancer': ['CST1', 'CXCL9', 'CXCL10', 'CXCL11', 'UBD', 'IDO1', 'MMP7', 'CLDN1', 'APOC1', 'OLFM4', 'CLDN3', 'CDH17', 'SPP1', 'COL10A1', 'CXCL8', 'CXCL1', 'SULF1', 'MMP11', 'SFRP4', 'THBS4', 'THBS2', 'BGN', 'FNDC1', 'COL8A1', 'ASPN', 'VIL1', 'MUC3A', 'INHBA']
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